Low genetic diversity in the masked palm civet Paguma larvata (Viverridae)
Identifieur interne : 000245 ( France/Analysis ); précédent : 000244; suivant : 000246Low genetic diversity in the masked palm civet Paguma larvata (Viverridae)
Auteurs : M. Patou [France] ; J. Chen [République populaire de Chine] ; L. Cosson [France] ; D. H. Andersen [Italie] ; C. Cruaud [France] ; A. Couloux [France] ; E. Randi [Italie] ; S. Zhang [République populaire de Chine] ; G. Veron [France]Source :
- Journal of Zoology [ 0952-8369 ] ; 2009-07.
English descriptors
- Teeft :
- Allele, Allele frequency data, Bayesian inference, Body colour, Body length, Carnivora, China forestry publishing house, Chinese academy, Chinese civets, Chinese group, Chinese haplogroups, Chinese individuals, Chinese populations, Civet, Civet populations, Control region, Corbet hill, Cytb, Departement systematique, Different civet populations, Different populations, Exact tests, Farm populations, Field field, Genetic, Genetic differentiation, Genetic distance, Genetic distances, Genetic divergence, Genetic diversity, Genetic exchange, Genetic signature, Genetic variability, Genetics, Geographic origin, Guangxi, Haplotype, Haplotype network, High number, Hong kong, Hubei, Hubei province, Indochinese, Indochinese region, Journal compilation, Larvata, Locus, London patou, Malaysia, Mammal, Mammal species, Market animals, Market civets, Maximal values, Microsatellite, Mismatch distribution, Mitochondrial, Mitochondrial genes, Mitochondrial phylogeography, Molecular evolution, Molecular results, Molecular variance, Multiple tests, Museum specimens, Mutation model, National taiwan university, Natural history, Nite population, Northern laos, Nucleotidic diversity, Paguma, Paguma larvata, Pairwise, Pairwise differences, Palm civet, Palm civet paguma larvata, Palm civet paguma larvata patou, Palm civet populations, Palm civets, Paris cedex, Patou, Phylogenetic, Phylogenetic tree, Phylogenetic trees, Phylogeographic, Phylogeographic pattern, Polymorphic microsatellite markers, Population history, Population structure, Present status, Program fstat, Root haplotype, Sars coronavirus, Shanxi, Shanxi farm guangxi farm, Shanxi farm population, Sichuan, Sichuan farm hubei farm hubei, Sichuan farm populations, Sichuan province, Sudden population expansion, Sundaic, Sundaic individuals, Sundaic region, Unknown origin, Variability, Veron, Vietnam, Vietnamese samples, Viverridae, White head pattern, Wild civet populations, Wild civets, Wild individuals, Wild population, Wild populations, Wildlife trade, Xihua university museum, Zhang, Zoological, Zoological society, Zoology.
Abstract
The masked palm civet is distributed through south‐east Asia, China and the Himalayas. Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet Paguma larvata. First, two portions of mitochondrial genes, cytochrome b and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.
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DOI: 10.1111/j.1469-7998.2009.00570.x
Affiliations:
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Because of its potential role in the severe acute respiratory syndrome (SARS) epidemic, it has become important to gather information on this species, and notably to provide a tool to determine the origin of farm and market animals. For this purpose, we studied the genetic variability and the phylogeographic pattern of the masked palm civet Paguma larvata. First, two portions of mitochondrial genes, cytochrome b and the control region, were sequenced for a total of 76 individuals sampled from China, the Indochinese region and the Sundaic region. Results indicated a low genetic variability and suggested a lack of a phylogeographic structure in this species, which do not allow inferring the geographic origin of samples of unknown origin, although it is possible to distinguish individuals from China and the Sundaic region. This low variation is in contrast to the well‐marked morphological differentiation between the populations in the Sundaic and Chinese–Indochinese regions. We also used five microsatellite loci to genotype 149 samples from two wild and four farmed populations in China, where the masked palm civet is farmed and where the SARS coronavirus was isolated. These analyses also showed a reduced variability in Chinese civets and showed that farmed populations did not exhibit a lower genetic diversity than wild populations, suggesting frequent introductions of wild individuals into farms.</div></front></TEI><affiliations><list><country><li>France</li><li>Italie</li><li>République populaire de Chine</li></country><region><li>Guangdong</li></region><settlement><li>Jiangmen</li></settlement></list><tree><country name="France"><noRegion><name sortKey="Patou, M" sort="Patou, M" uniqKey="Patou M" first="M." last="Patou">M. Patou</name></noRegion><name sortKey="Cosson, L" sort="Cosson, L" uniqKey="Cosson L" first="L." last="Cosson">L. Cosson</name><name sortKey="Couloux, A" sort="Couloux, A" uniqKey="Couloux A" first="A." last="Couloux">A. Couloux</name><name sortKey="Cruaud, C" sort="Cruaud, C" uniqKey="Cruaud C" first="C." last="Cruaud">C. Cruaud</name><name sortKey="Veron, G" sort="Veron, G" uniqKey="Veron G" first="G." last="Veron">G. Veron</name></country><country name="République populaire de Chine"><region name="Guangdong"><name sortKey="Chen, J" sort="Chen, J" uniqKey="Chen J" first="J." last="Chen">J. Chen</name></region><name sortKey="Zhang, S" sort="Zhang, S" uniqKey="Zhang S" first="S." last="Zhang">S. Zhang</name></country><country name="Italie"><noRegion><name sortKey="Andersen, D H" sort="Andersen, D H" uniqKey="Andersen D" first="D. H." last="Andersen">D. H. Andersen</name></noRegion><name sortKey="Randi, E" sort="Randi, E" uniqKey="Randi E" first="E." last="Randi">E. Randi</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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